Small intestine colonisation

Prebiotics that build up gently

Why some fibres cause bloating and others feed the gut microbiota gently.

How solid is the research? Trust score 3 of 5:Promising

That fibres are fermented at different speeds is well shown in the lab. There are studies in IBS for partially hydrolysed guar gum and psyllium. That slow prebiotics build up “without problems” is plausible but has been little studied in humans.

Healthy state

Prebiotics Food components, usually certain fibres, that specifically feed beneficial gut bacteria, such as inulin or GOS. are fibres that specifically feed beneficial gut bacteria. Well-known examples are inulin and fructo-oligosaccharides (FOS), for example from chicory, onions or Jerusalem artichoke. Humans have no digestive enzymes of their own for these sugar chains: neither saliva, nor stomach acid, nor the enzymes of the pancreas break them down. They travel unchanged through the stomach and small intestine and reach the large intestine. Only there do they meet bacteria that carry the right enzymes.

Fibres differ in how quickly they are fermented. Short chains such as FOS are used up within a few hours in the first part of the large intestine. Long-chain inulin, partially hydrolysed guar gum (PHGG, guar gum cut into shorter pieces), resistant starch or certain arabinoxylans from cereals are fermented more slowly and further along. In the lab, short fructans were fermented mainly in the first few hours, long inulin chains more steadily over a longer period. Besides chain length, branching, solubility and packaging matter: in whole foods, fibres sit inside cell walls that bacteria first have to open up. A pure powder is attackable at once. That is why the same amount of fibre often acts more strongly as a powder than in wholegrain bread or pulses.

The place of fermentation matters. In the first part of the colon plenty of sugar is available, the pH is slightly acidic at about 5.5 to 6, and the bacteria work fast. Further along, food runs short, the pH is closer to neutral, and the bacteria switch to protein. This produces substances such as ammonia, phenols and branched fatty acids, which in larger amounts tend to burden the lining. Slowly fermentable fibres carry carbohydrate into this far section and keep sugar fermentation going there. The result is Short-chain fatty acids Acids such as acetate, propionate and butyrate that gut bacteria make from fibre. They nourish the gut wall and act throughout the body. More in the chapter “Butyrate and other short-chain fatty acids” such as Butyrate A short-chain fatty acid and the main energy source for the cells of the colon wall. It strengthens the barrier and dampens inflammation. More in the chapter “Butyrate and other short-chain fatty acids”, the main fuel of colon cells, which also lower the pH and support the uptake of water and salts.

Every fermentation produces gas: hydrogen and carbon dioxide, in some people also methane. Part of it is used up straight away by other microbes in the gut, for example archaea (methane-producing single-celled organisms), and part enters the blood and is exhaled. What is left leaves as wind: ten to twenty times a day is normal. Whether this gas bothers you therefore depends not only on the amount but also on where it is made and how fast it moves on.

Start of the colonEndslow: e.g. resistant starch, oat brangas spread evenly
Slowly fermented fibres spread gas production over the whole colon.

Disrupted state: causes and effects

People with a sensitive gut often tolerate fast prebiotics poorly. In lab experiments with stool samples, fructans such as FOS and inulin produced a lot of gas in the first few hours, PHGG only moderate amounts. This explains why prebiotic powders often make bloating worse at first in Irritable bowel syndrome Recurring abdominal pain linked to bowel movements, without tests finding another cause. Today it is understood as a disorder of gut–brain interaction. More in the chapter “The gut-brain axis” or Small intestinal bacterial overgrowth (SIBO) Too many bacteria in the small intestine, where normally few live. Bloating and diarrhoea are typical; it is usually diagnosed with a breath test. More in the chapter “When the small intestine is too densely colonised”. Short chains also draw water into the gut, because as small particles they act osmotically. This can soften the stool.

Four mechanisms lie behind a bloated belly, and from the outside they feel the same. First, simply a lot of gas, because a great deal of fast food arrives at once. Second, gas in the wrong place: if many bacteria already sit in the small intestine, they ferment the prebiotic there, before the ileocaecal valve (the closing muscle between small and large intestine). The thin gut is stretched, and that hurts more. More on this in the chapter on small intestinal overgrowth. Third, a sensitive gut wall: in IBS the nerves react with pain to normal amounts of gas, and in some people the diaphragm tightens instead of relaxing while the abdominal wall bulges forward. The belly visibly grows although there is no more gas. Fourth, slow transit: in constipation the food stays longer, the bacteria have more time, and the gas moves on sluggishly. In the small intestine the cleaning wave between meals (MMC) moves leftovers and bacteria onward. Frequent snacking interrupts it.

Rapidly fermentable fructans are also FODMAP Short for fermentable sugars and sugar alcohols that are poorly absorbed in the small intestine, such as fructans, lactose, fructose and sorbitol. More in the chapter “Doing low-FODMAP right”. If you avoid them because of symptoms, you feed your Microbiome, gut microbiota The community of all microbes in the gut, mainly bacteria, plus viruses, fungi and archaea. Most live in the colon. More in the chapter “Building microbial diversity” less in the long run. In studies of the low-FODMAP diet, the number of bifidobacteria often fell. That is why this diet is meant as a phase, not a permanent state, and slowly fermentable fibres can close the gap.

The effect depends on your own gut microbiota. The same fibre clearly raises butyrate in some people and hardly at all in others. Transit time counts too: on average it is longer in women than in men, often also in older age, and many women notice more bloating before their period.

Three misunderstandings: “If it makes me bloated, it is working.” Not true, because the benefit lies in the fatty acids; gas is a by-product. “Slowly fermented means trouble-free.” That is plausible, but barely compared directly in humans. “More is better.” Also wrong: many studies show the benefit at moderate amounts, and too much at once overwhelms the gas disposal. A diary helps with observation: if the belly swells two to three hours after eating, that points more to the upper digestive tract or small intestine, many hours later more to the colon. This is only a rule of thumb, not a test.

Start of the colonEndfast: e.g. inulin in large amountsgas surge at the start: bloating
Fast-fermenting prebiotics in large amounts make a lot of gas at once, right at the start.

What often helps

Lifestyle

Diet, exercise, sleep, social contact and dealing with stress.

  • Start low, increase slowly Start with 2 to 3 g a day and increase over two to four weeks. The gut microbiota adapts, and bloating often eases. Spread the amount over meals instead of taking it all at once. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
  • Resistant starch from food Good sources are cooled potatoes, rice or pasta, oats and green bananas. Even small amounts are a good start. In foods the fibres sit in their natural packaging and are usually fermented more slowly than in a powder. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [1]
  • Only one new thing at a time Introduce one new fibre or powder and wait about a week before the next. Only then can you tell what suits you. Note the amount, time and symptoms, most easily in the symptom diary. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
  • Movement and drinking A walk after eating and enough water help move gut contents and gas along. Both are cheap and do no harm. There are no good studies on this specifically for prebiotics. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.

Natural supplements

Supplements do not replace a medical check-up. Discuss dosage and interactions with your doctor or pharmacist.

  • Partially hydrolysed guar gum (PHGG) In a randomised trial in IBS, 6 g a day for twelve weeks improved bloating and wind. It is considered well tolerated and is also used during a low-FODMAP diet. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [2]
  • Psyllium husk Psyllium is barely fermented, binds water and regulates stools. Guidelines recommend it for IBS. As food for the gut microbiota it is weaker, but it causes hardly any bloating. Established How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [3]
  • Long-chain inulin instead of short fructans In the lab, long inulin chains are fermented more slowly than short ones. Whether they are better tolerated in everyday life has barely been studied in humans. Experimental How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [4]

Medical treatments

Information, not a treatment recommendation. Decide together with a doctor. Approval and availability differ from country to country.

  • Get strong bloating checked first Strong bloating from even small amounts of fibre has many causes, most often IBS, less often small intestinal bacterial overgrowth. Talk to your doctor before diagnosing yourself or buying tests, and then build up carefully. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [5]
  • Rule out coeliac disease and other causes In IBS with diarrhoea, the US guideline recommends a blood test for coeliac disease before planning dietary steps. Constipation, which dams up gas, can also be treated. Bring your diary. Well supported How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [3]

From the community: what people report

Experiences and tips from people with the same problems that come up again and again, but for which there are no meaningful studies yet. They are explicitly not evidence.

  • Slowly fermenting fibers instead of psyllium and inulin

    In SIBO and FODMAP communities the same recommendation recurs: psyllium and inulin ferment quickly and cause bloating, so slowly fermenting fibers such as PHGG, acacia fiber or GOS are preferred. Many report that these are tolerated better and produce less gas; others react to them too with softer stool. The split into "slowly and quickly fermenting" comes mainly from blogs and is passed on in the forums as established. For psyllium it does not fit: in the lab it is barely and slowly fermented; with psyllium, bloating tends to come from increasing the amount too fast.

    Evidence: first hints Reported in: r/SIBO (Reddit community),r/Microbiome (Reddit community),r/ibs (Reddit community)

  • PHGG alongside a course of antibiotics

    A recurring sequence in r/SIBO: introduce PHGG before and during a rifaximin treatment and increase it slowly. Many report better tolerance of the treatment; a few, however, explicitly warn against continuing it after the course, because that could favor a relapse.

    Evidence: first hints Reported in: r/SIBO (Reddit community)

  • GOS for mood, sleep and drive

    Especially in r/Microbiome a GOS product is described as a remedy said to improve mood, drive, anxiety and sleep, sometimes up to "completely cured" of loss of pleasure. Others report no or only a small effect. The background is early studies on GOS and cortisol, which are carried much further in the forums; for self-treatment of depression or lack of drive the evidence is not sufficient.

    Evidence: conflicting Reported in: r/Microbiome (Reddit community),patient.info (forum)

Personal reports can mislead: what helps many people may be a placebo, and what helps one may harm another. Treat them as ideas to raise with your doctor or pharmacist – not as instructions.

In the mood for something completely different? Another one, at random

How we rate the evidence
Trust score 5 of 5:Established
Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies.
Trust score 4 of 5:Well supported
Several randomised studies in humans with largely consistent results.
Trust score 3 of 5:Promising
Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies.
Trust score 2 of 5:Plausible
Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms.
Trust score 1 of 5:Experimental
Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.

Sources

  1. Baxter et al. 2019: Resistant starch and inulin in 174 adults, butyrate response depends on one's own microbiota (mBio)
  2. Niv et al. 2016: Partially hydrolysed guar gum in IBS, randomised and placebo-controlled
  3. Lacy et al. 2021: ACG clinical guideline on irritable bowel syndrome (American Journal of Gastroenterology)
  4. Stewart et al. 2008: Lab study – short fructo-oligosaccharides are fermented faster than long-chain inulin
  5. Pimentel et al. 2020: ACG clinical guideline on small intestinal bacterial overgrowth (American Journal of Gastroenterology)
  6. Noack et al. 2013: Lab study – fermentation of wheat dextrin, inulin and guar gum compared (Nutrients)
  7. So et al. 2021: Lab study – gas production and metabolites of 15 dietary fibres, relevance for IBS (British Journal of Nutrition)

Your progress

Log in to mark chapters as read, rate them or report them for review. An account is optional and free.

Ratings by readers

No averages yet. They appear once 3 readers have answered a question.

Helpful for me 0 = not at all · 5 = very
How others rate it: not enough ratings yet
Had new information for me 0 = nothing new · 5 = a lot that was new
How others rate it: not enough ratings yet
Easy to understand 0 = very hard · 5 = very easy
How others rate it: not enough ratings yet
Matches my understanding 0 = contradicts it completely · 5 = matches it completely
How others rate it: not enough ratings yet
Correct and up to date 0 = wrong or outdated · 5 = correct and up to date
How others rate it: not enough ratings yet

Log in to rate this chapter. An account is optional and free.

Is something wrong here?

If you think something is wrong, outdated or misleading, report it for review. Every report is read and answered.

Log in to mark chapters as read, rate them or report them for review. An account is optional and free.