Lactose, fructose, gluten: making sense of intolerances
What real intolerances are, which tests are worth anything and when cutting foods out does harm.
How solid is the research? Trust score 3 of 5:Promising
Coeliac disease and lactose maldigestion are well understood and can be tested reliably. For fructose and gluten sensitivity without coeliac disease, much is unclear and the tests are of little value.
Cause or consequence? Root cause 3 of 5:Cause and consequence
Intolerances usually rest on missing enzymes. Two causes are often overlooked: a small-intestinal overgrowth and a more permeable gut lining can make the symptoms worse. They explain bloating, diarrhoea and abdominal pain.
Healthy state
The word “intolerance” is used for very different things, which is exactly what makes it confusing. There are three levels. An allergy is a defence reaction of the immune system, usually through IgE The antibody of classic allergy. It sits on mast cells and triggers their alarm on contact with the allergen. More in the chapter “Allergies and intolerances: how the gut learns to tolerate food”, and can occur even with small amounts. Coeliac disease An autoimmune disease in which gluten damages the lining of the small intestine. It is diagnosed with a blood test and usually a biopsy while you are still eating gluten. is an Autoimmune disease A disease in which the immune system attacks the body's own tissue, for example the thyroid in Hashimoto's or the pigment cells in vitiligo. More in the chapter “Autoimmune diseases and the gut: Hashimoto's, vitiligo, type 1 diabetes and more” in which gluten damages the lining of the small intestine. An intolerance in the narrow sense is purely a digestive matter: the body lacks an enzyme or a transporter, and the sugar stays in the gut. The treatment differs completely depending on the level, so it is worth keeping them apart.
Milk sugar (lactose) is a double sugar. The enzyme lactase sits on the surface of small intestinal cells, in the so-called brush border, and splits it into glucose and galactose, which then enter the blood. In most mammals and in a large share of people worldwide, lactase declines after weaning. Only people with a particular gene variant keep it into adulthood (“lactase persistence”), which is common mainly in northern Europe and some herding peoples. Worldwide, then, a fall in lactase is the normal case and persistence the exception.
Fruit sugar (fructose) is absorbed through the transporter GLUT5; a second route (GLUT2) kicks in when glucose is present at the same time. That is why fructose from fruit, where both sugars are roughly balanced, is tolerated better than fructose in excess, for example from juice, honey or sweetened drinks. Sugar alcohols (polyols) Sweeteners such as sorbitol, xylitol or maltitol, which also occur in fruit. They are barely absorbed and can cause bloating and diarrhoea. such as sorbitol are absorbed only hesitantly and can “add up” with fructose. The absorption capacity differs from person to person and from day to day.
Gluten is a mixture of proteins in wheat, rye and barley. The gut cannot break it down completely into single building blocks; fragments remain which, in people with the tissue types HLA-DQ2 or DQ8, can activate the immune system. This affects about one percent of people (coeliac disease). In everyone else, gluten is digested without an immune reaction. In addition there is wheat allergy, a separate and rare allergy to wheat proteins.
One point matters for understanding this: lactase sits on the tips of the small intestinal villi, the places that are easiest to injure. When the lining is damaged, lactase is usually the first thing to go. More on this under “Why it tips”.
Disrupted state: causes and effects
What is not absorbed in the small intestine moves into the large intestine. There, bacteria break the sugar down into gases (hydrogen, carbon dioxide, in some people methane) and Short-chain fatty acids Acids such as acetate, propionate and butyrate that gut bacteria make from fibre. They nourish the gut wall and act throughout the body. More in the chapter “Butyrate and other short-chain fatty acids”. In addition, the undigested sugar draws water into the gut (an osmotic effect). This explains the typical mix of bloating, rumbling, loose stool and diarrhoea, and why symptoms usually start a few hours after eating, when the load reaches the large intestine. That the sugar feeds bacteria there is not bad in itself; it becomes unpleasant when the amount exceeds what can be processed or the gut reacts particularly sensitively.
The amount decides. Most adults with lactase deficiency tolerate about 12 grams of lactose, roughly a glass of milk, without marked symptoms; complete avoidance is rarely necessary. Tolerance also depends on whether lactose comes with a meal (slower stomach emptying) and on whether the large intestine bacteria “get used” to lactose. Hard cheese, butter and many aged cheeses contain only traces; yoghurt and kefir are usually better tolerated because the bacteria in them have already broken down some lactose. Symptoms and measurement do not always go together: someone who is “positive” on a Breath test After drinking a sugar solution, hydrogen and methane in the breath are measured several times. This can reveal sugar intolerances and signs of bacterial overgrowth. More in the chapter “Gut tests: what they show and what they do not” does not have to have symptoms, and the other way round.
Behind a lactase deficiency there is often no inborn problem but damage to the lining. After a gut infection, with untreated coeliac disease, with inflammation or with Small intestinal bacterial overgrowth (SIBO) Too many bacteria in the small intestine, where normally few live. Bloating and diarrhoea are typical; it is usually diagnosed with a breath test. More in the chapter “When the small intestine is too densely colonised” (SIBO, see its own chapter), lactase is missing temporarily. Lactose intolerance is then a pointer to the cause. When the lining heals, lactase often returns. So if you suddenly cannot tolerate milk, do not only cut it out, but ask about the cause.
With fructose, the picture is less clear. “Fructose malabsorption” can be measured by a breath test, but the test is poorly reproducible and the test dose is far above what people usually eat. A targeted dietary trial is more helpful. Hereditary fructose intolerance (a missing enzyme in the liver) is something entirely different; it is rare and starts in infancy. Also rare is an inborn lack of the enzyme sucrase-isomaltase, which affects table sugar and starch products and sometimes only shows up in adulthood as “ Irritable bowel syndrome Recurring abdominal pain linked to bowel movements, without tests finding another cause. Today it is understood as a disorder of gut–brain interaction. More in the chapter “The gut-brain axis””.
Many who feel sensitive to gluten actually react to something else: in a small blinded study, fructans, sugar chains from wheat, caused more symptoms than gluten itself. Expectation also counts: people who believe they are getting gluten have symptoms even when it is a Placebo A dummy treatment without an active ingredient. Comparing with it shows how much a remedy achieves beyond expectation and chance. (“nocebo”). This does not mean the symptoms are imagined; they are real, but their cause often does not lie in gluten. Coeliac disease should still be ruled out before cutting out gluten, because the tests only work under a normal gluten intake.
Be careful with IgG blood tests for foods: they only show what your body has come into contact with, not what you do not tolerate. Allergy societies explicitly advise against them. Anyone who drops many foods after a positive result risks deficiencies and fear of food without the cause of the symptoms changing.
Where it comes from and where it leads
The same symptoms can have different roots. This map shows what may be involved in this problem and what may follow from it.
Possible causes. Low enzymes, SIBO, Leaky barrier, Parasites, Vagus nerve, Acid blockers (PPI), Bile acids, Medication, Gastroparesis, Ileocaecal valve, Weak cleaning wave, Low butyrate, Stress & sleep, Mould, Thin mucus layer, Mast cells, Long Covid, Heartburn, No gallbladder, Crohn’s & colitis, POTS & connective tissue, Autoimmunity, Low variety, Low anaerobes. Possible consequences. Food fear, Bloating, Diarrhoea, Abdominal pain, Nutrient deficiency, Brain fog & fatigue
- Possible causes
- This problem
- Possible consequences
The preview fits the screen width. In the large map you see everything at once.
Move the mouse over a box: its connections are highlighted and everything else steps back.
Tap a box to highlight its connections. Tap it again to open the chapter.
Connections, not certainty: a link means “can”, not “must”. What applies to you is best clarified in a talk with your doctor.
What often helps
Lifestyle
Diet, exercise, sleep, social contact and dealing with stress.
- Spread lactose over the day Small amounts with meals are tolerated better than a big glass on an empty stomach. Hard cheese and yoghurt contain little lactose; in cheese it has almost disappeared. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [1]
- Fructose: a diet trial instead of a test A targeted trial with less fructose shows more than a breath test. Fruits with a balanced sugar content, such as berries or citrus fruits, are often better tolerated than juice, dried fruit, honey or sweetened drinks. Important: after a few weeks, check again how much works. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [2]
- Do not go gluten-free before being tested for coeliac disease Coeliac tests only work as long as you eat gluten. Cutting it out beforehand distorts the result. Established How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [3]
- Try fermented dairy products Yoghurt and kefir are often tolerated better with lactase deficiency because the bacteria in them already split lactose. In a small study of 15 adults, kefir led to fewer symptoms. A trial is worthwhile before you cut out dairy altogether, since it supplies calcium and protein. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [4]
- Do not stack sugar and sugar alcohols People who tolerate fructose poorly often notice that sugar-free chewing gum, sweets and “light” products with sorbitol or xylitol make symptoms worse. Both partly use the same absorption route in the small intestine. When testing, change only one thing at a time. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [5]
Natural supplements
Supplements do not replace a medical check-up. Discuss dosage and interactions with your doctor or pharmacist.
- Lactase tablets They can help when you are about to eat a larger amount of lactose. The evidence is mixed; for most people, controlling the amount is enough. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
Medical treatments
Information, not a treatment recommendation. Decide together with a doctor. Approval and availability differ from country to country.
- Coeliac blood test The test looks for antibodies against tissue transglutaminase (together with total IgA), with a small intestine biopsy if needed. The guideline recommends the test for IBS symptoms. Established How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [3]
- Lactose breath test Reliably shows whether lactose is poorly absorbed. It does not show whether this causes symptoms. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [2]
- No IgG tests for foods Positive results are normal in healthy people too. They often lead to unnecessary diets. Well supported How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [6][7]
- Gluten challenge before testing, only with medical support If you already eat gluten-free but want to know whether you have coeliac disease, you must eat gluten regularly again for several weeks before the examination. This should be agreed with your doctor, especially if symptoms are strong. A gene test for HLA-DQ2/DQ8 can rule out coeliac disease when negative, without having to eat gluten. Well supported How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [8]
- Ask about the cause of a new intolerance A new intolerance to milk or sugar after an infection, with weight loss, blood in the stool or night-time symptoms should be checked by a doctor. Possibilities include coeliac disease, inflammatory bowel disease and small intestinal bacterial overgrowth. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [9]
In the mood for something completely different? Another one, at random
How we rate the evidence
- Trust score 5 of 5:Established
- Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies.
- Trust score 4 of 5:Well supported
- Several randomised studies in humans with largely consistent results.
- Trust score 3 of 5:Promising
- Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies.
- Trust score 2 of 5:Plausible
- Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms.
- Trust score 1 of 5:Experimental
- Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
Sources
- Shaukat et al. 2010: systematic review, most adults tolerate 12 to 15 g of lactose (Annals of Internal Medicine)
- Review 2021: How useful are hydrogen breath tests? (Nutrients)
- Lacy et al. 2021: ACG clinical guideline on irritable bowel syndrome (American Journal of Gastroenterology)
- Hertzler and Clancy 2003: kefir improves lactose digestion and tolerance in 15 adults
- Gibson et al. 2007: Fructose malabsorption and the bigger picture, review (Alimentary Pharmacology & Therapeutics)
- EAACI 2008: IgG4 tests for foods are not suitable for diagnosis (Allergy)
- CSACI 2012: Position statement on IgG testing for foods (Allergy, Asthma & Clinical Immunology)
- Rubio-Tapia et al. 2023: ACG guideline on coeliac disease (American Journal of Gastroenterology)
- Pimentel et al. 2020: ACG clinical guideline on small intestinal bacterial overgrowth (American Journal of Gastroenterology)
- Skodje et al. 2018: Fructans rather than gluten cause symptoms in self-reported gluten sensitivity (Gastroenterology)
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