Learning path: Understanding IBS · Chapter 1 of 7

Gut-brain axis

The gut-brain axis

How stress hits the stomach and why psychotherapy works for IBS.

How solid is the research? Trust score 4 of 5:Well supported

The connection between gut and brain and the effectiveness of gut-directed psychotherapy for IBS are well established. The role of the microbiome in this is less clear in humans.

Cause or consequence? Root cause 3 of 5:Cause and consequence

The gut-brain axis explains how stress and expectation arrive in the gut. It is therefore both a link and an explanation.

Healthy state

Gut and brain are connected by five routes. First, nerves: the Vagus nerve The tenth cranial nerve and the most important nerve of the rest-and-digest system. It connects the brainstem and the abdominal organs; most of its fibres tell the brain what is happening in the gut. More in the chapter “The vagus nerve: the data line between belly and head” as the “cable” between belly and brainstem, and the enteric nervous system, the “belly brain” of several hundred million nerve cells in the gut wall, which largely controls movement and secretion on its own. Second, hormones, above all the stress axis with cortisol and the hormone cells of the gut. Third, messengers of the immune system. Fourth, substances made by gut bacteria, such as Short-chain fatty acids Acids such as acetate, propionate and butyrate that gut bacteria make from fibre. They nourish the gut wall and act throughout the body. More in the chapter “Butyrate and other short-chain fatty acids”, Bile acids Substances made by the liver that make fat digestible. About 95 percent are reabsorbed in the last part of the small intestine; gut bacteria transform the rest. More in the chapter “Bile acids: when bile causes diarrhoea” derivatives and breakdown products of protein building blocks. And fifth, Mast cells Immune cells beneath the skin and mucous membranes, filled with histamine and other messengers. They raise the alarm in allergies, infections and stress. More in the chapter “Mast cells: alarm cells in the gut, histamine and the disputed MCAS” and other immune cells that sit right next to nerve endings in the gut wall. Most signals travel from the gut to the brain, not the other way round.

One example is serotonin. Most of the serotonin in the body is made by hormone cells in the gut wall, where it controls gut movement, fluid release and nausea. This serotonin is not the “mood substance” of the brain: it barely crosses the blood-brain barrier, and the brain makes its own. What is exciting is that in mice, hormone cells in the gut form direct contact points with vagus fibres and can report sugars or nutrients to the brain within fractions of a second, faster than through the blood.

Normally this stream is filtered. The brain assesses every signal: is it important or background noise? Descending pathways from the brain to the spinal cord dampen gut signals, just as you stop hearing a clock ticking after a while. Consciously, we notice only hunger, fullness, bloating and the urge to go. Attention, expectation, mood and earlier experience constantly adjust this filter. That is why the same stretch feels different when eating with friends than when alone before an exam.

What role gut microbes play is a field with big promises and small proof. In mice, a particular Lactobacillus changes behaviour and stress response, but only when the vagus nerve is intact. This shows that the route exists, not that the same effect occurs in humans. In humans, the links between Microbiome, gut microbiota The community of all microbes in the gut, mainly bacteria, plus viruses, fungi and archaea. Most live in the colon. More in the chapter “Building microbial diversity”, mood and gut sensitivity are mostly correlations: differences are seen, but often it is not known what is cause and what is consequence.

BrainGutFilteronly a few signals get through
The gut constantly reports to the brain. The brain filters out most signals.

Disrupted state: causes and effects

In Irritable bowel syndrome Recurring abdominal pain linked to bowel movements, without tests finding another cause. Today it is understood as a disorder of gut–brain interaction. and related conditions it is mainly the processing that is disturbed. Experts now speak of disorders of gut-brain interaction. There are two dials. At the gut itself the nerve endings become more sensitive (“peripheral sensitisation”); in affected people the gut wall contains more activated mast cells close to nerves, and in one study pain intensity was related to this. In the brain the filter weakens (“central sensitisation”): signals that normally stay below awareness are felt as pain or pressure. This is called visceral hypersensitivity. The gut is not “broken”; it reports too loudly.

Stress turns both dials. In a small study of healthy people, the stress hormone CRH made the small intestine more permeable via mast cells and changed gut movement, and the vagus nerve, which normally calms, was less active in IBS in some studies, as measured by heart rate variability. This mainly concerned subgroups, such as women or people with depression; on average, most studies found no clear difference (more in the chapter on the vagus nerve). In addition, tension stiffens the abdominal wall and pelvic floor, and shallow breathing does not exactly support digestion.

The opposite direction is just as important. Ongoing abdominal symptoms make you tired, anxious and low; inflammatory messengers alone can cause a feeling of illness and low mood. Anyone who fears the next flare avoids food, travel and appointments, watches the belly constantly and sleeps worse, and all of this sets the filter even more sensitively. For many the cycle begins with a trigger such as a gut infection, a course of antibiotics or a stressful phase of life. Why it stays in some people and not in others is not settled.

For microbes, too, there are hints but no certainty. In a mouse study, gut bacteria from the stool of people with IBS triggered abdominal pain via Histamine A messenger substance of the body that is also found in aged and fermented foods. Too much can cause headache, flushing or diarrhoea. More in the chapter “Histamine intolerance: much searched, little proven” and mast cells. This is a possible mechanism, but not yet a proven treatment approach in humans. What is certain is only that the composition of the gut flora in IBS is on average somewhat different from healthy people, without a uniform pattern.

Three misunderstandings are common. “Psychosomatic” does not mean “imagined”: the symptoms are real and have measurable foundations. “It’s only in the head” is just as wrong, because gut, immune cells and microbes are involved. And “if the tests are normal, nothing is there” is false: normal endoscopies and blood tests rule out serious disease, not a disorder of function. That is why you can work on the gut and the head at the same time, and that is exactly what the best treatments do.

BrainGutFilternormal signals are felt as painstress and gut fuel each other
Under stress or after inflammation the filter becomes leaky: normal gut signals feel like pain.

Where it comes from and where it leads

The same symptoms can have different roots. This map shows what may be involved in this problem and what may follow from it.

Possible causes. Stress & sleep. Possible consequences. Sensitive stomach, Food fear, Abdominal pain, Nutrient deficiency, Brain fog & fatigue

  • Possible causes
  • This problem
  • Possible consequences

The preview fits the screen width. In the large map you see everything at once.

Move the mouse over a box: its connections are highlighted and everything else steps back.

Tap a box to highlight its connections. Tap it again to open the chapter.

Connections, not certainty: a link means “can”, not “must”. What applies to you is best clarified in a talk with your doctor.

What often helps

Lifestyle

Diet, exercise, sleep, social contact and dealing with stress.

  • Regular relaxation Breathing exercises and walks dampen the stress response. For yoga in IBS, a meta-analysis of 11 small studies has so far found no clear benefit. Find something you will really keep doing. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [1]
  • Exercise Regular moderate exercise eases symptoms in IBS in studies. Everyday movement counts too; what matters is regularity. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [2]
  • Reduce avoidance step by step If you avoid food, travel or meetings out of fear of your belly, you keep the filter sensitive. In behavioural therapy for IBS you practise doing these things again in small steps. You can start on your own, with the easiest situation first. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [3]
  • Diaphragmatic breathing instead of pulling the belly in Breathing deep into the belly and letting the abdominal wall relax on the in-breath can reduce tension and the feeling of being bloated. For people who tense the belly unconsciously, targeted training with feedback also helps. The evidence for this concerns mainly bloating. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [4]
  • Diary instead of constant checking A few weeks of writing down symptoms, stress and food shows patterns. After that, deliberately stop listening to your belly all day; constant monitoring amplifies signals. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.

Natural supplements

Supplements do not replace a medical check-up. Discuss dosage and interactions with your doctor or pharmacist.

  • Peppermint oil Enteric-coated peppermint oil capsules ease abdominal pain and cramps in IBS. The guideline suggests them, and a meta-analysis supports this. It can worsen heartburn. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [5][6]
  • Probiotics for mood and stress So-called psychobiotics have mainly been studied in animals. The results in humans are inconsistent. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
  • Soluble fibre According to the guideline, soluble fibre such as psyllium improves overall symptoms in IBS, insoluble fibre such as wheat bran probably does not. Increase slowly, otherwise it causes gas. Well supported How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [5]

Medical treatments

Information, not a treatment recommendation. Decide together with a doctor. Approval and availability differ from country to country.

  • Gut-directed psychotherapy Gut-directed hypnosis and cognitive behavioural therapy often ease IBS symptoms lastingly. A meta-analysis of 53 studies found benefit. In some countries there are also apps that doctors can prescribe. Well supported How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [5][7]
  • Low-dose antidepressants Tricyclic antidepressants in low doses dampen the transmission of pain from the gut. They are used for this even without depression. They do not work immediately and have side effects such as dry mouth and constipation, so they should be medically supervised. Established How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [5]
  • Ruling out other causes IBS is diagnosed from the symptoms, but other conditions such as coeliac disease or chronic bowel inflammation should be ruled out when there are suggestive signs. Warning signs such as blood in the stool, weight loss, symptoms that wake you from sleep or onset after age 50 need prompt checking. Well supported How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [5]
  • Medicines by main symptom Depending on the symptom pattern there are medicines for cramps, diarrhoea or constipation, and choosing them belongs in a doctor's hands. They complement work on the gut-brain axis but do not replace it. Well supported How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [5]

In the mood for something completely different? Another one, at random

How we rate the evidence
Trust score 5 of 5:Established
Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies.
Trust score 4 of 5:Well supported
Several randomised studies in humans with largely consistent results.
Trust score 3 of 5:Promising
Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies.
Trust score 2 of 5:Plausible
Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms.
Trust score 1 of 5:Experimental
Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.

Sources

  1. Saab et al. 2025: yoga for IBS, meta-analysis of 11 randomised trials (American Journal of Gastroenterology)
  2. Johannesson et al. 2011: more physical activity eases IBS symptoms, randomised trial (American Journal of Gastroenterology)
  3. Everitt et al. 2019: Telephone and web CBT for IBS, ACTIB trial with 558 people (Gut)
  4. Barba et al. 2015: abdominal wall and diaphragm movement in a distended abdomen, corrected by biofeedback (Gastroenterology)
  5. Lacy et al. 2021: ACG clinical guideline on irritable bowel syndrome (American Journal of Gastroenterology)
  6. Ingrosso et al. 2022: peppermint oil in IBS, systematic review and meta-analysis (Alimentary Pharmacology & Therapeutics)
  7. Ford et al. 2019: Antidepressants and psychological therapies in IBS, meta-analysis of 53 trials (American Journal of Gastroenterology)
  8. Breit et al. 2018: The vagus nerve as a mediator of the gut–brain axis, review (Frontiers in Psychiatry)
  9. Kaelberer et al. 2018: Gut hormone cells form contact points with the vagus nerve, mouse study (Science)
  10. Bravo et al. 2011: A Lactobacillus changes behaviour in mice only with an intact vagus (PNAS)
  11. Barbara et al. 2004: Activated mast cells close to nerves and pain in IBS, 44 people (Gastroenterology)
  12. Vanuytsel et al. 2014: Stress and CRH make the small intestine more permeable via mast cells (Gut)
  13. Mazurak et al. 2012: Heart rate variability in IBS, review (Neurogastroenterology & Motility)
  14. Dantzer et al. 2008: From inflammation to sickness and depression (Nature Reviews Neuroscience)
  15. De Palma et al. 2022: Histamine-producing gut bacteria trigger abdominal pain via mast cells, mouse study with stool from IBS patients (Science Translational Medicine)
  16. Mearin et al. 2016: Rome IV criteria for functional bowel disorders (Gastroenterology)

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