Mouth and gut: how teeth, gums and mouthwash touch the gut flora
Every day we swallow billions of mouth bacteria. Usually this is harmless, but with inflamed gums, acid blockers or a weakened gut flora, some of them settle in the gut.
How solid is the research? Trust score 2 of 5:Plausible
It is established that mouth and gut flora are connected and that good dental care prevents gum inflammation. That this protects the gut is plausible and shown in animals, but in humans it is only supported by associations.
Cause or consequence? Root cause 3 of 5:Cause and consequence
The mouth flora is both a gateway and a mirror: it suffers under acid blockers and can carry inflammation into the body.
Healthy state
After the gut, the mouth is the most densely colonised place in the body, with hundreds of bacterial species on teeth, tongue, gums and in saliva. Fungi, viruses and Bacteriophages Viruses that only infect bacteria. In the gut there are probably about as many phages as bacteria, perhaps more, and they help determine which bacteria prevail. More in the chapter “Bacteriophages: the hunters in the gut”, that is, viruses that infect bacteria, are there too. Every site has its own community: the rough tongue hosts different species from the gum pockets, where hardly any oxygen reaches.
The mouth is also the first part of digestion. Chewing breaks the food down so that enzymes and acid have more surface to work on later. Saliva makes the bite slippery and starts starch digestion, and it contains substances that keep bacteria in check, including IgA (secretory IgA) The antibody of the mucous membranes. It is released into the gut in large amounts, where it holds germs in the mucus without causing inflammation. More in the chapter “IgA: the antibody that keeps the gut clean, and what vitamin A, D and omega-3 have to do with it”, lysozyme and lactoferrin. The salivary glands produce about one to one and a half litres a day; at night much less flows, which is why bacteria multiply overnight and breath often smells bad in the morning.
With saliva we constantly swallow an enormous number of mouth bacteria. It used to be thought that practically none of them arrive in the gut. A study of saliva and stool samples from 470 people in five countries showed otherwise: in healthy people the same bacterial strains were often found in mouth and gut. Most of these species could cross over, and in the researchers’ assessment many settle in the gut. So the mouth is a constant supply for the gut.
That this mostly stays harmless is due to several protective layers. Stomach acid kills many bacteria. Bile and the small intestine’s Migrating motor complex A wave of muscle contractions that sweeps the stomach and small intestine empty about every one and a half to two hours when fasting. Eating interrupts it. More in the chapter “Intermittent fasting and meal timing: 16:8, 5:2 and Ramadan” do the rest. And the established Microbiome, gut microbiota The community of all microbes in the gut, mainly bacteria, plus viruses, fungi and archaea. Most live in the colon. More in the chapter “Building microbial diversity” occupies the places, so newcomers find it hard to gain a foothold. IgA antibodies also keep mouth bacteria in check in the gut.
The mouth also has its own job for the circulation. Bacteria on the tongue convert nitrate from vegetables into nitrite. From this the body makes nitric oxide, which widens blood vessels. This pathway depends directly on the mouth flora.
Disrupted state: causes and effects
Dental plaque is a Biofilm A community of microbes that sticks to a surface and embeds itself in a self-made protective coat, such as dental plaque. More in the chapter “Biofilms in the gut and “biofilm busters””: bacteria stick to the tooth surface in a slime layer they make themselves, where they are protected from rinsing and defences. If it stays at the gum line, the gums become inflamed (gingivitis), bleed and swell. When the inflammation reaches the jawbone, it is called periodontitis. The community then shifts towards species that grow without oxygen and feed inflammation. Experts speak of a vicious circle: the inflamed gum supplies nutrients from the blood that favour exactly these species.
How much protection saliva offers depends on how much there is. Dry mouth is common, especially with age, and comes from many medications, for example against allergies, depression, weak bladder or high blood pressure, from mouth breathing and from Autoimmune disease A disease in which the immune system attacks the body's own tissue, for example the thyroid in Hashimoto's or the pigment cells in vitiligo. More in the chapter “Autoimmune diseases and the gut: Hashimoto's, vitiligo, type 1 diabetes and more” such as Sjögren’s syndrome. Without saliva, caries, fungal infection and gum inflammation increase. Smoking, diabetes and pregnancy also make the gums more vulnerable. People who cannot chew well, for example because of tooth loss or badly fitting dentures, often choose softer, lower-nutrient food and swallow coarser lumps.
In mice, periodontitis germs reached the gut and aggravated gut inflammation there, together with immune cells that had been primed in the inflamed mouth and migrated to the gut. In a Japanese study, Klebsiella strains from the saliva of people settled in the gut of germ-free mice. They were resistant to several antibiotics, prevailed mainly when the gut flora was disturbed, and triggered strong inflammation in susceptible animals.
In humans there are matching associations. People with Inflammatory bowel disease Umbrella term for Crohn’s disease and ulcerative colitis: long-term, relapsing inflammation of the gut that needs medical treatment. More in the chapter “Immune system and inflammation” have periodontitis more often. In liver cirrhosis, more than half of the increased gut species originally came from the mouth. In bowel cancer, researchers found the same strain of Fusobacterium nucleatum in the tumour and in the mouth. What is cause and what is consequence is open, and no study shows that better oral hygiene prevents these diseases.
Acid blockers open the gate further. In people taking Proton pump inhibitors (PPIs) Acid blockers such as omeprazole or pantoprazole. They inhibit the acid pump in the stomach lining. More in the chapter “Acid blockers (PPIs): what they change in the gut and how to stop them properly”, significantly more mouth bacteria are found in stool, because stomach acid is missing as a filter. Something similar was seen in people with IgA deficiency.
Too much hygiene can also do harm. Antiseptic mouthwash with chlorhexidine reduced nitrite formation in the mouth by 90 per cent and the blood nitrite level by a quarter in one study. Blood pressure rose by 2 to 3.5 mmHg. After a week of chlorhexidine, the saliva was more acidic and the mouth flora clearly shifted. In an observational study, people who used mouthwash twice a day more often developed diabetes or a precursor within three years. The caveat remains: these are small studies and associations, not proof that mouthwash harms the gut or heart.
Where it comes from and where it leads
The same symptoms can have different roots. This map shows what may be involved in this problem and what may follow from it.
Possible causes. Acid blockers (PPI), Heartburn, Hormones & cycle, Long Covid, POTS & connective tissue, Endurance sport. Possible consequences. Digestive chain, Inflammation, Weak digestion, Brain fog & fatigue, Nutrient deficiency, Bloating, Diarrhoea
- Possible causes
- This problem
- Possible consequences
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Connections, not certainty: a link means “can”, not “must”. What applies to you is best clarified in a talk with your doctor.
What often helps
Lifestyle
Diet, exercise, sleep, social contact and dealing with stress.
- Clean teeth and the spaces between them Brushing twice a day with fluoride toothpaste is the basis. Floss or interdental brushes further reduce gum inflammation, according to a Cochrane review with low certainty, but consistently. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [1]
- Antiseptic mouthwash not as a daily routine Chlorhexidine makes sense for a limited time, for example after procedures or on a dentist's advice. Used daily without a reason, it shifts the mouth flora and weakens nitrate conversion. If you like mouthwash, ask about mild products and the right way to use them. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [2][3][4]
- No smoking, little sugar Smoking and frequent sugar promote periodontitis and tooth decay. This is classic dentistry; there is no dedicated study for the gut, but a benefit via the mouth flora is plausible. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
- Chew thoroughly, keep saliva flowing Long chewing breaks food down and stimulates saliva flow; this relieves the stomach and small intestine. For the gut this is not well proven; it follows the mechanism. Sugar-free chewing gum and enough drinking help if your mouth is often dry. Breathing mostly through the mouth dries it out further. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
Natural supplements
Supplements do not replace a medical check-up. Discuss dosage and interactions with your doctor or pharmacist.
- Oil pulling, tongue scrapers and oral probiotics There is no good evidence that oil pulling protects the gums or the gut. A tongue scraper can reduce bad breath; nothing more has been shown. Probiotic lozenges for the mouth have hardly been studied. None of these replaces brushing your teeth and seeing a dentist. Experimental How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
Medical treatments
Information, not a treatment recommendation. Decide together with a doctor. Approval and availability differ from country to country.
- Get periodontitis treated In diabetes, professional treatment of periodontitis lowered the long-term blood sugar marker HbA1c by about 0.4 percentage points after three to four months, with moderate certainty. Such studies are lacking for the gut, but treated inflammation in the mouth is a gain in any case. Bleeding gums are a reason to see a dentist. Well supported How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [5]
- Review acid blockers If you take proton pump inhibitors long term, have it checked whether they are still needed. Without stomach acid, considerably more mouth bacteria reach the gut. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [6][7]
- With gut inflammation, think of the mouth too People with Crohn's disease or ulcerative colitis more often have periodontitis. Regular dental check-ups are therefore part of their care. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [8][9]
- Clarify dry mouth If dry mouth persists, take a look at your own medications: sometimes there is an alternative, or the dose can be adjusted. With a dry mouth and dry eyes, an autoimmune disease may be behind it. Dental check-ups should then be more frequent, because caries develops faster. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
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How we rate the evidence
- Trust score 5 of 5:Established
- Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies.
- Trust score 4 of 5:Well supported
- Several randomised studies in humans with largely consistent results.
- Trust score 3 of 5:Promising
- Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies.
- Trust score 2 of 5:Plausible
- Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms.
- Trust score 1 of 5:Experimental
- Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
Sources
- Worthington et al. 2019: Cleaning between the teeth, Cochrane review
- Kapil et al. 2013: Antiseptic mouthwash lowers nitrite and raises blood pressure, 19 people (Free Radical Biology & Medicine)
- Bescos et al. 2020: Chlorhexidine mouthwash changes the mouth flora, 36 people (Scientific Reports)
- Joshipura et al. 2017: Mouthwash and diabetes risk, observational study (Nitric Oxide)
- Simpson et al. 2022: Periodontitis treatment and blood sugar in diabetes, Cochrane review
- Imhann et al. 2016: Acid blockers change the gut flora, 1815 people (Gut)
- Freedberg et al. 2017: Benefits and risks of long-term PPI use, AGA advice (Gastroenterology)
- Papageorgiou et al. 2017: Inflammatory bowel disease and oral health, meta-analysis (Journal of Clinical Periodontology)
- Kitamoto & Kamada 2023: The oral-gut axis, a missing piece in the IBD puzzle, review (Inflammation and Regeneration)
- Schmidt et al. 2019: Mouth bacteria regularly reach the gut (eLife)
- Atarashi et al. 2017: Klebsiella from the mouth trigger inflammation in the gut, mouse study (Science)
- Kitamoto et al. 2020: Periodontitis worsens gut inflammation, mouse study (Cell)
- Fadlallah et al. 2018: Gut flora in people with IgA deficiency (Science Translational Medicine)
- Qin et al. 2014: Gut flora in liver cirrhosis with many species from the mouth (Nature)
- Komiya et al. 2019: The same Fusobacterium strains in colorectal cancer and mouth (Gut)
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