Gut and endurance sport: runner’s gut, cramps and what helps
During long, hard sessions the gut gets less blood, briefly becomes leakier and digests less well. Why runners are hit more often, what heat and ibuprofen have to do with it, and why the gut can be trained.
How solid is the research? Trust score 3 of 5:Promising
That long, hard endurance exercise briefly damages the gut and makes it leakier has been shown in many measurements and is considered established. What helps against it is mostly based on small studies with 10 to 20 athletes, often from the same research group. The best evidence is for gut training, a carbohydrate mix and avoiding ibuprofen.
Cause or consequence? Root cause 2 of 5:Rather a consequence
In athletes, hard endurance exercise is often the direct trigger of diarrhoea, heartburn and iron deficiency. But the symptoms usually disappear again after a few hours. It is rarely the root of longer-lasting gut problems.
Healthy state
Exercise redistributes blood around the body. At rest a large share flows through the stomach, gut and liver, because digestion needs a lot of oxygen. During hard exercise the nervous system diverts blood to the working muscles and to the skin, which cools the body. At maximal effort, blood flow to the gut can drop by up to 80 percent. The gut copes easily with short and moderate sessions.
In sensible amounts, endurance exercise is good for the gut. Movement stimulates gut motility and helps with sluggish digestion. In one study, six weeks of endurance training shifted the Microbiome, gut microbiota The community of all microbes in the gut, mainly bacteria, plus viruses, fungi and archaea. Most live in the colon. More in the chapter “Building microbial diversity” towards more Butyrate A short-chain fatty acid and the main energy source for the cells of the colon wall. It strengthens the barrier and dampens inflammation. More in the chapter “Butyrate and other short-chain fatty acids”-producing bacteria, independently of diet. In Irritable bowel syndrome Recurring abdominal pain linked to bowel movements, without tests finding another cause. Today it is understood as a disorder of gut–brain interaction. More in the chapter “The gut-brain axis”, more exercise improved symptoms in a Randomised trial A study in which chance decides who gets the treatment and who does not, for comparison. This makes results particularly reliable. , and at a follow-up about five years later participants were still better off than before.
The gut can also adapt to eating during exercise. Sugar is absorbed in the small intestine through transporters, and there are different kinds. Glucose uses a different route from fructose. With glucose alone, at most about 60 grams per hour reach the blood, because its transporter is then saturated. A mix of both uses two routes at once; in studies this allowed up to 65 percent more sugar to be used. Whatever is absorbed in the small intestine cannot ferment in the large intestine.
A well-known study found more bacteria of the genus Veillonella in marathon runners after the race. They feed on lactic acid (lactate), which builds up during hard exercise, and turn it into the Short-chain fatty acids Acids such as acetate, propionate and butyrate that gut bacteria make from fibre. They nourish the gut wall and act throughout the body. More in the chapter “Butyrate and other short-chain fatty acids” propionate. Mice given these bacteria ran longer. Whether this works the same way in humans has not been shown. But the study shows that gut microbiota and training influence each other.
Disrupted state: causes and effects
Many endurance athletes know nausea, burping, abdominal cramps, sudden urgency or diarrhoea during exercise, known as “runner’s trots”. According to studies this affects 30 to 50 percent of athletes, and up to 93 percent in triathlons in the heat. Severe symptoms affect around 4 percent in marathons and up to 32 percent in Ironman races. Experts call it exercise-induced gastrointestinal syndrome. It becomes measurable from about two hours of exercise at moderate to high intensity, largely regardless of how fit someone is.
What happens in the gut is well studied. The cells of the small-intestinal lining get less blood and therefore less oxygen, and are briefly damaged. A protein from these cells (I-FABP) rises in the blood and serves as a marker of the damage. The gut wall becomes leakier for a few hours, bacterial components get into the blood and trigger an inflammatory response. At the same time the stomach empties more slowly, the small intestine slows down and sugar is absorbed less well. What is not absorbed ferments in the large intestine and causes gas, cramps and diarrhoea. In healthy people this usually heals within a few hours without lasting effects.
Heat makes everything worse. In an analysis of 132 two-hour runs at 21 to 37 degrees Celsius, the more body temperature rose, the greater the gut damage, inflammation and symptoms. Starting already dehydrated also causes more problems. After a sauna session with 3 percent weight loss, the stomach emptied more slowly during cycling, and the athletes had clearly more nausea and stomach cramps.
Runners are affected more often than cyclists, because the constant up and down shakes the belly. In a comparison under the same conditions, 44 percent had symptoms when running and 25 percent when cycling, but severity was the same. On the bike the upper abdomen is affected more, because the bent posture presses on the stomach. Heartburn is also more common when running. Measurements showed that the valve at the stomach entrance does not open more often during running, but when it does, acid is more likely to flow back, probably because of higher pressure in the abdomen and the movement.
Food plays a big role. Fibre, fat, a lot of protein and fermentable sugars ( FODMAP Short for fermentable sugars and sugar alcohols that are poorly absorbed in the small intestine, such as fructans, lactose, fructose and sorbitol. More in the chapter “Doing low-FODMAP right”) shortly before exercise stay in the gut for a long time and ferment there. Sugar during exercise can also cause problems if the gut is not used to it. In a survey of 221 endurance athletes, sugar intake ranged from 6 to 136 grams per hour. Those who ate a lot had more nausea and bloating more often, but were also faster in the Ironman.
Ibuprofen and similar painkillers before exercise make the damage worse. In a small study with nine trained men, the damage marker rose almost twice as high after cycling with ibuprofen as after cycling without, and the gut wall became leakier. The researchers therefore advised against taking painkillers preventively before exercise.
Long-distance runners have iron deficiency more often. One reason is blood from the gut: after races of 10 to 42 kilometres, 20 of 24 runners had more blood in their stool than before, mostly invisible. On top of that, after hard exercise the body ramps up the hormone hepcidin for some hours, which slows iron absorption in the gut. Very rarely, the lack of oxygen leads to real inflammation of the large intestine with visible blood (ischaemic colitis), so far known only from case reports.
For people with irritable bowel syndrome or Inflammatory bowel disease Umbrella term for Crohn’s disease and ulcerative colitis: long-term, relapsing inflammation of the gut that needs medical treatment. More in the chapter “Immune system and inflammation”, studies suggest moderate exercise tends to help. Whether very long and hard efforts are safe for them has barely been studied. Those who already have a sensitive gut in everyday life often notice runner’s gut earlier and more strongly.
Where it comes from and where it leads
The same symptoms can have different roots. This map shows what may be involved in this problem and what may follow from it.
Possible causes. . Possible consequences. Heartburn, Diarrhoea, Nutrient deficiency, Acid blockers (PPI), Food fear, Brain fog & fatigue, Mouth & gums, Digestive chain, SIBO, Low variety, Opportunists, Allergies
- Possible causes
- This problem
- Possible consequences
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Move the mouse over a box: its connections are highlighted and everything else steps back.
Tap a box to highlight its connections. Tap it again to open the chapter.
Connections, not certainty: a link means “can”, not “must”. What applies to you is best clarified in a talk with your doctor.
What often helps
Lifestyle
Diet, exercise, sleep, social contact and dealing with stress.
- Train your gut The gut gets used to absorbing sugar during exercise. In one study, runners took 90 grams of carbohydrate per hour during daily sessions for two weeks. Afterwards they had clearly fewer symptoms during exercise, less undigested sugar in the gut, and ran further. So don’t try gels for the first time in a race; build up slowly in long training sessions. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [1][2]
- Eat lighter before a race Eating less fibre, fat and fermentable sugars (FODMAPs) in the one to three days before a long race reduced symptoms in two small studies. Ideally have the last larger meal two to four hours before. This is not meant for everyday life, because in the long run the gut microbiota needs fibre. Gluten-free did not help in studies when there was no coeliac disease. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [3][4][5]
- Mix sugars instead of using just one For sessions over two to three hours, a mix of glucose and fructose delivers more energy than one type alone, and less stays in the gut. Pure fructose or sugar alcohols like sorbitol, on the other hand, are poorly tolerated by many. Newer products such as hydrogels have so far shown no advantage over regular gels. Well supported How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [6][7]
- Take heat seriously and don’t start thirsty The hotter the body gets, the more the gut suffers. In the heat, lower the pace, start well hydrated and drink regularly along the way. If you regularly get cramps or diarrhoea on hot days, move your hard sessions to the cool morning hours. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [8][9][10]
- For heartburn: keep a gap after eating If you get heartburn when running, it often helps not to eat anything substantial two to three hours before training. Cycling or swimming shake the belly less. If you still have regular symptoms, have them checked by a doctor. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [11]
Natural supplements
Supplements do not replace a medical check-up. Discuss dosage and interactions with your doctor or pharmacist.
- Probiotics: benefit uncertain Two reviews of around 10 to 26 studies came to different conclusions. Overall, supplements brought no clear advantage; for probiotics there was a moderate but uncertain effect. Which strain helps at what dose is unclear. A trial over a few weeks in training usually does no harm, but it is not a proven approach. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [12][13]
- Glutamine and colostrum: blood markers yes, symptoms unclear In many small studies, glutamine and colostrum (first milk from cows) lowered the damage markers in the blood after exercise. A meta-analysis did not show that athletes also feel better or are faster with them. More on this in the chapter on leaky gut supplements. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [10][13]
- Take iron wisely If iron deficiency has been found: after hard exercise the hormone hepcidin slows iron absorption for a few hours. In a study with runners, iron was absorbed best when taken in the morning shortly after training, and less well in the afternoon. Only take iron after a blood test, because too much is harmful. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [14][15]
Medical treatments
Information, not a treatment recommendation. Decide together with a doctor. Approval and availability differ from country to country.
- No ibuprofen before or during exercise Painkillers like ibuprofen, diclofenac or naproxen increase the gut damage from exercise and make the gut wall leakier. You should not take them preventively before a run. For pain after exercise, talk to a doctor or pharmacist about alternatives. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [16]
- Always have blood in the stool checked Visible blood after a hard run can come from a brief circulation problem in the large intestine, which usually heals on its own. But it can also have other causes, such as inflammatory bowel disease or a polyp. That is why it always belongs in medical hands, especially if it comes back or if pain, fever or dizziness are added. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [17][18]
- Have your ferritin measured If you run a lot and feel tired, are getting slower or look pale, have your iron stores (ferritin) and a blood count checked. Iron deficiency is common in endurance athletes, but not always harmless: with unexplained iron deficiency, coeliac disease or bleeding in the gut should also be considered. Promising How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [18][14]
- With a gut condition, discuss the load With irritable bowel syndrome or inflammatory bowel disease you don’t have to give up sport; moderate exercise often helps. If you are planning a marathon or longer races, discuss it with your care team, because how safe very hard efforts are in that case has barely been studied. Plausible How we rate the evidence Established Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies. Well supported Several randomised studies in humans with largely consistent results. Promising Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies. Plausible Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms. Experimental Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open. [19][20]
In the mood for something completely different? Another one, at random
How we rate the evidence
- Trust score 5 of 5:Established
- Recommended in medical guidelines or supported by several consistent meta-analyses of randomised human studies.
- Trust score 4 of 5:Well supported
- Several randomised studies in humans with largely consistent results.
- Trust score 3 of 5:Promising
- Single randomised or controlled studies in humans, not yet independently confirmed — or many consistent observational studies.
- Trust score 2 of 5:Plausible
- Two cases: first observational or pilot studies with small samples — or a settled basis that is not in dispute, such as movement, sleep or meal pauses. But not tested in humans for symptoms.
- Trust score 1 of 5:Experimental
- Barely studied in humans. Mainly lab and animal studies or theoretical reasoning; whether it helps is open.
Sources
- Miall et al. 2018: Two weeks of gut training reduce symptoms and undigested sugar, randomised trial with 18 runners (Scandinavian Journal of Medicine & Science in Sports)
- Martinez et al. 2023: Gut training and gastrointestinal symptoms in endurance exercise, systematic review (Sports Medicine)
- Lis et al. 2018: Low FODMAP against gastrointestinal symptoms in runners, crossover study with 11 people (Medicine & Science in Sports & Exercise)
- Wiffin et al. 2019: Short-term low FODMAP in recreational runners, crossover study with 16 people (Journal of the International Society of Sports Nutrition)
- Montero-Carrasco et al. 2024: Carbohydrates, gluten-free and low FODMAP against symptoms in endurance sport, systematic review (Nutrients)
- Jeukendrup 2010: Mixing glucose and fructose in endurance sport, review (Current Opinion in Clinical Nutrition and Metabolic Care)
- Mlinaric and Mohorko 2025: Nutrition strategies against gastrointestinal symptoms in endurance sport, systematic review (Journal of the International Society of Sports Nutrition)
- Henningsen et al. 2024: Rise in body temperature predicts gut damage and symptoms, 132 runs (Temperature)
- van Nieuwenhoven et al. 2000: Dehydration slows the stomach during exercise and increases nausea, 10 athletes (European Journal of Applied Physiology)
- Chantler et al. 2022: Supplements and exercise-induced gut damage, systematic review (PLOS ONE)
- Herregods et al. 2016: Running and heartburn, measurements in 10 people (American Journal of Gastroenterology)
- Łagowska et al. 2022: Probiotics against gastrointestinal symptoms in athletes, systematic review (Nutrients)
- Aitkenhead et al. 2025: Supplements against gut symptoms during exercise, meta-analysis (Nutrients)
- Peeling et al. 2009: Hepcidin rises after hard exercise, 8 athletes (International Journal of Sport Nutrition and Exercise Metabolism)
- McCormick et al. 2019: Iron absorption after morning and afternoon training, 16 runners (Medicine & Science in Sports & Exercise)
- van Wijck et al. 2012: Ibuprofen aggravates gut damage from cycling, 9 athletes (Medicine & Science in Sports & Exercise)
- Benmassaoud et al. 2014: Circulation problem of the large intestine in a marathon runner, case report (Endoscopy)
- Stewart et al. 1984: Blood loss via the gut and anaemia in runners, 24 runners (Annals of Internal Medicine)
- Costa et al. 2017: Exercise-induced gastrointestinal syndrome, systematic review (Alimentary Pharmacology & Therapeutics)
- Johannesson et al. 2011: more physical activity eases IBS symptoms, randomised trial (American Journal of Gastroenterology)
- de Oliveira, Burini and Jeukendrup 2014: Gastrointestinal complaints during exercise: prevalence, causes, nutrition, review (Sports Medicine)
- Allen et al. 2018: Endurance training changes the gut microbiota independently of diet (Medicine & Science in Sports & Exercise)
- Johannesson et al. 2015: More exercise in IBS still works after about five years, follow-up (World Journal of Gastroenterology)
- Scheiman et al. 2019: Veillonella in marathon runners uses lactic acid, study in athletes and mice (Nature Medicine)
- Costa, Mika and McCubbin 2022: Running and cycling compared, 28 endurance athletes at 35 degrees (Journal of Science and Medicine in Sport)
- Pfeiffer et al. 2012: Food intake and gastrointestinal symptoms in competition, 221 endurance athletes (Medicine & Science in Sports & Exercise)
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